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ensembl-database

97 / 100 · Low risk

Fine to try.

By franklee16/academic-research-skills (GitHub) · data · 234 stars · scanned at commit 9a4b2db

Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP). Use this skill as a primary ID translator, genomic sequence database and variant effect prediction tool.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ensembl-database' ] || [ -L ~/.agents/skills/'ensembl-database' ]; then echo 'A skill folder named ensembl-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/franklee16/academic-research-skills' "$d" && git -C "$d" checkout --quiet '9a4b2db21fc4b217136ae4a0e6faad42d179ca03' -- 'science-skills/ensembl_database' && mkdir -p ~/.agents/skills && cp -R "$d"/'science-skills/ensembl_database' ~/.agents/skills/'ensembl-database' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ensembl-database' ~/.claude/skills/'ensembl-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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