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embl-ebi-ols

95 / 100 · Low risk

Fine to try.

By franklee16/academic-research-skills (GitHub) · other · 234 stars · scanned at commit 9a4b2db

Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP). Use when the user asks to search for terms, retrieve details, navigate hierarchies (parents, children, ancestors), look up properties and individuals, get autocomplete suggestions, or access ontology metadata and statistics.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'embl-ebi-ols' ] || [ -L ~/.agents/skills/'embl-ebi-ols' ]; then echo 'A skill folder named embl-ebi-ols already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/franklee16/academic-research-skills' "$d" && git -C "$d" checkout --quiet '9a4b2db21fc4b217136ae4a0e6faad42d179ca03' -- 'science-skills/embl_ebi_ols' && mkdir -p ~/.agents/skills && cp -R "$d"/'science-skills/embl_ebi_ols' ~/.agents/skills/'embl-ebi-ols' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'embl-ebi-ols' ~/.claude/skills/'embl-ebi-ols' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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