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alphagenome-single-variant-analysis

87 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By franklee16/academic-research-skills (GitHub) · coding · 234 stars · scanned at commit 9a4b2db

Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical significance, disease associations, functional effects, gene expression changes, splicing disruption, or regulatory effects in promoters and enhancers. Also use for resolving biological terms to tissue/cell-type ontologies (UBERON/CL) or analyzing…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'alphagenome-single-variant-analysis' ] || [ -L ~/.agents/skills/'alphagenome-single-variant-analysis' ]; then echo 'A skill folder named alphagenome-single-variant-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/franklee16/academic-research-skills' "$d" && git -C "$d" checkout --quiet '9a4b2db21fc4b217136ae4a0e6faad42d179ca03' -- 'science-skills/alphagenome_single_variant_analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'science-skills/alphagenome_single_variant_analysis' ~/.agents/skills/'alphagenome-single-variant-analysis' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'alphagenome-single-variant-analysis' ~/.claude/skills/'alphagenome-single-variant-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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