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scanpy

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By foryourhealth111-pixel/Vibe-Skills (GitHub) · coding · 3,816 stars · scanned at commit 8af6e23

Single-cell RNA-seq and retained scverse workflow owner. Load .h5ad/10X data, manage AnnData metadata, plan scVI/scANVI batch-correction workflows, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scanpy' ] || [ -L ~/.agents/skills/'scanpy' ]; then echo 'A skill folder named scanpy already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/foryourhealth111-pixel/Vibe-Skills' "$d" && git -C "$d" checkout --quiet '8af6e230d3db0f3022236e67632be6d8b9323bf0' -- 'bundled/skills/scanpy' && mkdir -p ~/.agents/skills && cp -R "$d"/'bundled/skills/scanpy' ~/.agents/skills/'scanpy' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scanpy' ~/.claude/skills/'scanpy' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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