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genomi
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Check before installing.
By exon-research/genomi (GitHub) · other · 492 stars · scanned at commit 1df4f5b
Use this skill for genetics, genome source, variant, gene, phenotype, disease, screen, pharmacogenomics, and Genomi install/setup maintenance questions.
Works with any agent that supports SKILL.md skills.
Partially scanned — some files couldn't be read; we'll retry on the next scan
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 7 places.
Show 4 more
Runs commands on your computer
This is disclosed by the author in the skill's SKILL.md or README.
Found in 50 places.
Show 17 more
- scripts/build_dashboard.py, line 78
subprocess.run( - scripts/build_dashboard.py, line 82
stdout=subprocess.DEVNULL, - scripts/build_dashboard.py, line 87
result = subprocess.run( - scripts/build_dashboard.py, line 92
stdout=subprocess.PIPE, - skills/ancestry/SKILL.md, line 76
genomi install --libraries ancestry-1000g-30x-grch38 - src/genomi/active_genome_index/alignment.py, line 234
aligner_proc = subprocess.Popen(align_command, stdout=subprocess.PIPE) - src/genomi/active_genome_index/alignment.py, line 237
sorted_proc = subprocess.run(sort_command, stdin=aligner_proc.stdout, check=False) - src/genomi/active_genome_index/alignment.py, line 377
mpileup = subprocess.Popen(mpileup_command, stdout=subprocess.PIPE) - src/genomi/active_genome_index/alignment.py, line 380
called = subprocess.run(call_command, stdin=mpileup.stdout, check=False) - src/genomi/active_genome_index/alignment.py, line 431
completed = subprocess.run( - src/genomi/active_genome_index/canonical.py, line 129
proc = subprocess.run( - src/genomi/active_genome_index/canonical.py, line 151
decomp = subprocess.Popen( - src/genomi/active_genome_index/canonical.py, line 153
stdout=subprocess.PIPE, - src/genomi/active_genome_index/canonical.py, line 154
stderr=subprocess.DEVNULL, - src/genomi/active_genome_index/canonical.py, line 156
proc = subprocess.Popen(bgzip_cmd, stdin=decomp.stdout, stdout=out) - src/genomi/active_genome_index/canonical.py, line 174
proc = subprocess.Popen(bgzip_cmd, stdin=subprocess.PIPE, stdout=out) - src/genomi/active_genome_index/canonical.py, line 189
proc = subprocess.Popen(bgzip_cmd, stdin=subprocess.PIPE, stdout=out)
and 30 more places
Connects to the internet
This is disclosed by the author in the skill's SKILL.md or README.
Found in 33 places.
Show 17 more
- src/genomi/capabilities/analytical_grounding/analytical_grounding/helpers.py, line 314
with urllib.request.urlopen(url, timeout=30) as response: - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 7
import urllib.request - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 208
request = urllib.request.Request(url, headers={"Accept": "application/json", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 209
with urllib.request.urlopen(request, timeout=30) as response: - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 214
request = urllib.request.Request(url, headers={"Accept": "text/plain", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 215
with urllib.request.urlopen(request, timeout=30) as response: - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 220
request = urllib.request.Request(url, headers={"Accept": "application/octet-stream", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/analytical_grounding/entity_relationships/helpers.py, line 221
with urllib.request.urlopen(request, timeout=30) as response: - src/genomi/capabilities/decode/local_server.py, line 12
import urllib.request - src/genomi/capabilities/decode/local_server.py, line 117
with urllib.request.urlopen(url, timeout=0.25) as response: - src/genomi/capabilities/functional_genomics/geo/client.py, line 7
import urllib.request - src/genomi/capabilities/functional_genomics/geo/client.py, line 171
request = urllib.request.Request(url, headers={"Accept": "application/json", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/functional_genomics/geo/client.py, line 172
with urllib.request.urlopen(request, timeout=30) as response: - src/genomi/capabilities/functional_genomics/geo/client.py, line 177
request = urllib.request.Request(url, headers={"Accept": "text/html,text/plain,*/*", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/functional_genomics/geo/client.py, line 178
with urllib.request.urlopen(request, timeout=30) as response: - src/genomi/capabilities/functional_genomics/geo/client.py, line 183
request = urllib.request.Request(url, headers={"Accept": "text/plain,application/gzip,*/*", "User-Agent": "genomi/0.1"}) - src/genomi/capabilities/functional_genomics/geo/client.py, line 184
with urllib.request.urlopen(request, timeout=60) as response:
and 13 more places
Other copies in this repository
exon-research/genomi has 1 more folder with a skill named genomi. This page shows the lowest-scoring copy.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'genomi' ] || [ -L ~/.agents/skills/'genomi' ]; then echo 'A skill folder named genomi already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/exon-research/genomi' "$d" && git -C "$d" checkout --quiet '1df4f5bfb635e2d08f93a1102b70b840fbe80d86' -- '.' && mkdir -p ~/.agents/skills && cp -R "$d/." ~/.agents/skills/'genomi' && rm -rf ~/.agents/skills/'genomi'/.git && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'genomi' ~/.claude/skills/'genomi' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for exon-research/genomi shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/exon-research/genomi/)
Score history
| Date | Version | Score |
|---|
| 2026-11-08 | 1df4f5b | 97 |
| 2026-11-06 | 1df4f5b | 79 |