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lifesciences-graph-builder
82 / 100 · Low risk
Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.
By diegosouzapw/awesome-omni-skill (GitHub) · coding · 66 stars · scanned at commit a6b3c30
Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCP tools for entity resolution and curl for edge discovery, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug targets", or mentions traversing gene→protein→pathway→drug→disease paths, multi-API orchestration, or graph persistence workflows.
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: rest.genenames.org, api.platform.opentargets.org, clinicaltrials.gov, rest.ensembl.org, www.ebi.ac.uk, string-db.org, eutils.ncbi.nlm.nih.gov, raw.githubusercontent.com
This is disclosed by the author in the skill's SKILL.md or README.
Found in 15 places.
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- skills/tools/lifesciences-graph-builder/SKILL.md, line 309
curl -s -X POST "https://api.platform.opentargets.org/api/v4/graphql" \ - skills/tools/lifesciences-graph-builder/SKILL.md, line 334
curl -s -X POST "https://api.platform.opentargets.org/api/v4/graphql" \ - skills/tools/lifesciences-graph-builder/SKILL.md, line 383
curl -s "https://clinicaltrials.gov/api/v2/studies?query.cond=cancer&query.intr=venetoclax&pageSize=5&format=json" \ - skills/tools/lifesciences-graph-builder/SKILL.md, line 389
curl -s "https://clinicaltrials.gov/api/v2/studies?query.cond=fibrodysplasia+ossificans+progressiva&pageSize=10&format=json" - skills/tools/lifesciences-graph-builder/SKILL.md, line 423
curl -s "https://rest.ensembl.org/xrefs/id/ENSG00000141510?content-type=application/json" \ - skills/tools/lifesciences-graph-builder/SKILL.md, line 491
| Drug → Target | `curl -s "https://www.ebi.ac.uk/chembl/api/data/mechanism?molecule_chembl_id={ID}&format=json"` | - skills/tools/lifesciences-graph-builder/SKILL.md, line 492
| Target → Drugs | Open Targets `knownDrugs` GraphQL (preferred) or `curl -s "https://www.ebi.ac.uk/chembl/api/data/mechanism?target_chembl_id={ID}&format=json" - skills/tools/lifesciences-graph-builder/SKILL.md, line 493
| Drug → Disease | `curl -s "https://www.ebi.ac.uk/chembl/api/data/drug_indication?molecule_chembl_id={ID}&format=json"` | - skills/tools/lifesciences-graph-builder/SKILL.md, line 495
| Gene → Orthologs | `curl -s "https://rest.ensembl.org/homology/id/human/{ENSG}?type=orthologues&content-type=application/json"` | - skills/tools/lifesciences-graph-builder/SKILL.md, line 496
| Protein Set → GO | `curl -s "https://string-db.org/api/json/enrichment?identifiers={IDs}&species=9606"` | - skills/tools/lifesciences-graph-builder/SKILL.md, line 497
| Gene → PubMed | `curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=pubmed&id={ID}&retmode=json"` | - skills/tools/lifesciences-graph-builder/metadata.json, line 24
"install_command": "mkdir -p .claude/skills/lifesciences-graph-builder && curl -sL \"https://raw.githubusercontent.com/donbr/lifesciences-deepagents/main/.claud
Runs commands on your computer
The author does not mention this. Expected for a coding skill.
Found in 8 places.
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Changes files outside its own folder
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'lifesciences-graph-builder' ] || [ -L ~/.agents/skills/'lifesciences-graph-builder' ]; then echo 'A skill folder named lifesciences-graph-builder already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/diegosouzapw/awesome-omni-skill' "$d" && git -C "$d" checkout --quiet 'a6b3c3005cedf056a48b084671c6282426d6e9fc' -- 'skills/tools/lifesciences-graph-builder' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/tools/lifesciences-graph-builder' ~/.agents/skills/'lifesciences-graph-builder' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'lifesciences-graph-builder' ~/.claude/skills/'lifesciences-graph-builder' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for diegosouzapw/awesome-omni-skill shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/diegosouzapw/awesome-omni-skill/)
Score history
| Date | Version | Score |
|---|
| 2026-11-07 | a6b3c30 | 82 |