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hic-matrix-qc

82 / 100 · Low risk

Fine to try. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By diegosouzapw/awesome-omni-skill (GitHub) · data · 66 stars · scanned at commit a6b3c30

This skill performs standardized quality control (QC) on Hi-C contact matrices stored in .mcool or .cool format. It computes coverage and cis/trans ratios, distance-dependent contact decay (P(s) curves), coverage uniformity, and replicate correlation at a chosen resolution using cooler and cooltools. Use it to assess whether Hi-C data are of sufficient quality for downstream analyses such as TAD calling, loop detection, and compartment analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

diegosouzapw/awesome-omni-skill has 1 more folder with a skill named hic-matrix-qc. This page shows the lowest-scoring copy.

• skills/tools/hic-matrix-qc-majiayu000 82/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'hic-matrix-qc' ] || [ -L ~/.agents/skills/'hic-matrix-qc' ]; then echo 'A skill folder named hic-matrix-qc already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/diegosouzapw/awesome-omni-skill' "$d" && git -C "$d" checkout --quiet 'a6b3c3005cedf056a48b084671c6282426d6e9fc' -- 'skills/tools/hic-matrix-qc' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/tools/hic-matrix-qc' ~/.agents/skills/'hic-matrix-qc' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'hic-matrix-qc' ~/.claude/skills/'hic-matrix-qc' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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