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alignment-level-QC

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By diegosouzapw/awesome-omni-skill (GitHub) · data · 66 stars · scanned at commit a6b3c30

Calculates technical mapping statistics for any aligned BAM file (ChIP or ATAC). It assesses the performance of the aligner itself by generating metrics on read depth, mapping quality, error rates, and read group data using samtools and Picard.Use this skill to check "how well the reads mapped" or to validate BAM formatting/sorting before further processing. Do NOT use this skill for biological signal validation (like checking for peaks or open chromatin) or for filtering/removing reads.

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

diegosouzapw/awesome-omni-skill has 1 more folder with a skill named alignment-level-QC. This page shows the lowest-scoring copy.

• skills/development/alignment-level-qc-majiayu000 80/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'alignment-level-qc' ] || [ -L ~/.agents/skills/'alignment-level-qc' ]; then echo 'A skill folder named alignment-level-qc already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/diegosouzapw/awesome-omni-skill' "$d" && git -C "$d" checkout --quiet 'a6b3c3005cedf056a48b084671c6282426d6e9fc' -- 'skills/development/alignment-level-qc' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/development/alignment-level-qc' ~/.agents/skills/'alignment-level-qc' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'alignment-level-qc' ~/.claude/skills/'alignment-level-qc' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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