← All skills
nfcore-rnaseq-wrapper
95 / 100 · Low risk
Fine to try.
By ClawBio/ClawBio (GitHub) · other · 1,182 stars · scanned at commit a4a8c72
Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 38 places.
Show 17 more
- skills/nfcore-rnaseq-wrapper/executor.py, line 140
proc = subprocess.Popen( - skills/nfcore-rnaseq-wrapper/executor.py, line 160
except subprocess.TimeoutExpired: - skills/nfcore-rnaseq-wrapper/executor.py, line 199
def _terminate_process_tree(proc: subprocess.Popen) -> None: - skills/nfcore-rnaseq-wrapper/executor.py, line 206
except (OSError, ProcessLookupError, subprocess.TimeoutExpired): - skills/nfcore-rnaseq-wrapper/executor.py, line 213
except (OSError, ProcessLookupError, subprocess.TimeoutExpired): - skills/nfcore-rnaseq-wrapper/executor.py, line 217
subprocess.run( - skills/nfcore-rnaseq-wrapper/executor.py, line 219
stdout=subprocess.DEVNULL, - skills/nfcore-rnaseq-wrapper/executor.py, line 220
stderr=subprocess.DEVNULL, - skills/nfcore-rnaseq-wrapper/executor.py, line 224
except (OSError, subprocess.SubprocessError): - skills/nfcore-rnaseq-wrapper/executor.py, line 229
except subprocess.TimeoutExpired: - skills/nfcore-rnaseq-wrapper/nfcore_rnaseq_wrapper.py, line 1223
proc = subprocess.run( - skills/nfcore-rnaseq-wrapper/nfcore_rnaseq_wrapper.py, line 1229
except (OSError, subprocess.SubprocessError): - skills/nfcore-rnaseq-wrapper/nfcore_rnaseq_wrapper.py, line 1546
result = subprocess.run( - skills/nfcore-rnaseq-wrapper/nfcore_rnaseq_wrapper.py, line 1553
except subprocess.TimeoutExpired: - skills/nfcore-rnaseq-wrapper/pipeline_source.py, line 85
proc = subprocess.run( - skills/nfcore-rnaseq-wrapper/pipeline_source.py, line 93
except (subprocess.CalledProcessError, FileNotFoundError, OSError, subprocess.TimeoutExpired): - skills/nfcore-rnaseq-wrapper/preflight.py, line 214
proc = subprocess.run(args, capture_output=True, text=True, errors="replace", timeout=_SUBPROCESS_TIMEOUT)
and 18 more places
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'nfcore-rnaseq-wrapper' ] || [ -L ~/.agents/skills/'nfcore-rnaseq-wrapper' ]; then echo 'A skill folder named nfcore-rnaseq-wrapper already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ClawBio/ClawBio' "$d" && git -C "$d" checkout --quiet 'a4a8c7281c8ddd8a0b84c5cffae5d9a0760f40fe' -- 'skills/nfcore-rnaseq-wrapper' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/nfcore-rnaseq-wrapper' ~/.agents/skills/'nfcore-rnaseq-wrapper' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'nfcore-rnaseq-wrapper' ~/.claude/skills/'nfcore-rnaseq-wrapper' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for ClawBio/ClawBio shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/ClawBio/ClawBio/)
Score history
| Date | Version | Score |
|---|
| 2026-11-12 | a4a8c72 | 95 |