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scvi-tools

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By charlieviettq/awesome-agent-skill (GitHub) · coding · 27 stars · scanned at commit c567ae4

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers incl…

Works with any agent that supports SKILL.md skills.

What this skill can do

Other copies in this repository

charlieviettq/awesome-agent-skill has 3 more folders with a skill named scvi-tools. This page shows the lowest-scoring copy.

• plugins/knowledge-work-all/skills/scvi-tools 95/100 · Low risk
• .cursor/skills/knowledge-work/bio-research/scvi-tools 95/100 · Low risk
• plugins/knowledge-work-bio-research/skills/scvi-tools 95/100 · Low risk

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scvi-tools' ] || [ -L ~/.agents/skills/'scvi-tools' ]; then echo 'A skill folder named scvi-tools already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/charlieviettq/awesome-agent-skill' "$d" && git -C "$d" checkout --quiet 'c567ae426d55fa498e919fc0f5a37c582d5c7a2c' -- '.claude/skills/scvi-tools' && mkdir -p ~/.agents/skills && cp -R "$d"/'.claude/skills/scvi-tools' ~/.agents/skills/'scvi-tools' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scvi-tools' ~/.claude/skills/'scvi-tools' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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