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code-exec-skills
65 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a research skill usually looks things up on the internet.
By brycewang-stanford/Auto-Empirical-Research-Skills (GitHub) · research · 5,016 stars · scanned at commit 8684584
7 code execution skills. Trigger: running code, interactive notebooks, Jupyter, Colab, sandboxed execution. Design: execution environment guides with setup instructions and best practices.
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 30 places.
Show 17 more
- skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 146
pip install nbstripout - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 164
ssh -N -L 8888:localhost:8888 user@cluster.university.edu - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 32
mkdir -p ~/.kaggle - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 40
export KAGGLE_USERNAME=$KAGGLE_USERNAME - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 47
pip install kaggle - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 58
kaggle datasets list -s "climate change" --sort-by votes - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 68
kaggle datasets download -d "heptapod/titanic" --unzip -p ./data/titanic/ - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 78
kaggle competitions list - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 88
kaggle competitions submit -c "house-prices-advanced-regression-techniques" \ - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 99
kaggle kernels list -s "transformer nlp" --sort-by voteCount - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 124
result = subprocess.run(cmd, capture_output=True, text=True) - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 146
result = subprocess.run(cmd, capture_output=True, text=True) - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 33
git clone https://git.overleaf.com/YOUR_PROJECT_ID my-paper - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 46
git pull origin master - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 62
git pull origin master - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 80
pip install overleaf-sync - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 104
PROJECT_DIR="$1"
and 10 more places
Sends data to these websites: example.com
The author does not mention this. Expected for a research skill.
Found in 1 place.
Downloads and installs other software
The author does not mention this.
Found in 23 places.
Show 17 more
- skills/43-wentorai-research-plugins/skills/tools/code-exec/google-colab-guide/SKILL.md, line 155
!pip install -q transformers accelerate - skills/43-wentorai-research-plugins/skills/tools/code-exec/google-colab-guide/SKILL.md, line 184
!pip install -q transformers==4.40.0 datasets==2.18.0 evaluate==0.4.1 - skills/43-wentorai-research-plugins/skills/tools/code-exec/google-colab-guide/SKILL.md, line 187
!pip install -q git+https://github.com/huggingface/peft.git - skills/43-wentorai-research-plugins/skills/tools/code-exec/google-colab-guide/SKILL.md, line 219
!pip install -q -r /content/drive/MyDrive/research/requirements.txt - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 81
pip install pandas==2.1.4 scipy==1.11.4 matplotlib==3.8.2 jupyterlab==4.0.9 - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 134
| jupyterlab-git | Version control integration | `pip install jupyterlab-git` | - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 135
| jupyterlab-lsp | Code intelligence (autocomplete) | `pip install jupyterlab-lsp` | - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 136
| nbdime | Notebook diffing and merging | `pip install nbdime` | - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 137
| jupytext | Pair notebooks with .py scripts | `pip install jupytext` | - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 138
| jupyter-book | Convert notebooks to publications | `pip install jupyter-book` | - skills/43-wentorai-research-plugins/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md, line 146
pip install nbstripout - skills/43-wentorai-research-plugins/skills/tools/code-exec/kaggle-api-guide/SKILL.md, line 47
pip install kaggle - skills/43-wentorai-research-plugins/skills/tools/code-exec/overleaf-cli-guide/SKILL.md, line 80
pip install overleaf-sync - skills/43-wentorai-research-plugins/skills/tools/code-exec/python-reproducibility-guide/SKILL.md, line 26
pip install -r requirements.txt - skills/43-wentorai-research-plugins/skills/tools/code-exec/python-reproducibility-guide/SKILL.md, line 37
uv pip install -r requirements.txt - skills/43-wentorai-research-plugins/skills/tools/code-exec/python-reproducibility-guide/SKILL.md, line 47
pip install pip-tools - skills/43-wentorai-research-plugins/skills/tools/code-exec/python-reproducibility-guide/SKILL.md, line 211
RUN apt-get update && apt-get install -y \
and 3 more places
Changes files outside its own folder
The author does not mention this.
Found in 2 places.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'code-exec-skills' ] || [ -L ~/.agents/skills/'code-exec-skills' ]; then echo 'A skill folder named code-exec-skills already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills' "$d" && git -C "$d" checkout --quiet '8684584e7d1127940f018157d2c579974fae8f79' -- 'skills/43-wentorai-research-plugins/skills/tools/code-exec' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/43-wentorai-research-plugins/skills/tools/code-exec' ~/.agents/skills/'code-exec-skills' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'code-exec-skills' ~/.claude/skills/'code-exec-skills' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for brycewang-stanford/Auto-Empirical-Research-Skills shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/brycewang-stanford/Auto-Empirical-Research-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-10 | 8684584 | 65 |
| 2026-11-08 | bfa0a6e | 65 |
| 2026-11-07 | bfa0a6e | 65 |