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chemistry-skills
75 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a research skill usually looks things up on the internet.
By brycewang-stanford/Auto-Empirical-Research-Skills (GitHub) · research · 5,016 stars · scanned at commit 8684584
9 chemistry skills. Trigger: chemical structure analysis, reaction prediction, molecular modeling. Design: computational chemistry tools and cheminformatics workflows.
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: api.catalysis-hub.org, pubchem.ncbi.nlm.nih.gov
The author does not mention this. Expected for a research skill.
Found in 14 places.
Show 11 more
- skills/43-wentorai-research-plugins/skills/domains/chemistry/catalysis-hub-api/SKILL.md, line 103
curl -s -X POST "https://api.catalysis-hub.org/graphql" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/catalysis-hub-api/SKILL.md, line 137
resp = requests.post(ENDPOINT, json={"query": query}) - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 29
curl "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/aspirin/JSON" - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 41
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/caffeine/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 56
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/ibuprofen/property/MolecularFormula,MolecularWeight,CanonicalSMILES,IUPACName,XLogP/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 63
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastformula/C8H10N4O2/property/IUPACName,MolecularWeight,CanonicalSMILES/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 72
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastsimilarity_2d/cid/2244/property/IUPACName,MolecularWeight,CanonicalSMILES/JSON?Threshold=90" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 81
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2244/assaysummary/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 97
resp = requests.get(url) - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 141
resp = requests.get(url) - skills/43-wentorai-research-plugins/skills/domains/chemistry/retrosynthesis-guide/SKILL.md, line 107
response = requests.post(
Runs commands on your computer
The author does not mention this.
Found in 13 places.
Show 10 more
- skills/43-wentorai-research-plugins/skills/domains/chemistry/catalysis-hub-api/SKILL.md, line 103
curl -s -X POST "https://api.catalysis-hub.org/graphql" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/chemgraph-agent-guide/SKILL.md, line 22
pip install chemgraph - skills/43-wentorai-research-plugins/skills/domains/chemistry/computational-chemistry-guide/SKILL.md, line 72
orca geometry_optimization.inp > geometry_optimization.out - skills/43-wentorai-research-plugins/skills/domains/chemistry/molecular-dynamics-guide/SKILL.md, line 38
gmx pdb2gmx -f protein.pdb -o processed.gro -water tip3p -ff amber99sb-ildn - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 29
curl "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/aspirin/JSON" - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 41
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/caffeine/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 56
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/ibuprofen/property/MolecularFormula,MolecularWeight,CanonicalSMILES,IUPACName,XLogP/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 63
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastformula/C8H10N4O2/property/IUPACName,MolecularWeight,CanonicalSMILES/JSON" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 72
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastsimilarity_2d/cid/2244/property/IUPACName,MolecularWeight,CanonicalSMILES/JSON?Threshold=90" \ - skills/43-wentorai-research-plugins/skills/domains/chemistry/pubchem-api-guide/SKILL.md, line 81
curl -s "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2244/assaysummary/JSON" \
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Safer alternatives
Low-risk skills in the same category (research) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'chemistry-skills' ] || [ -L ~/.agents/skills/'chemistry-skills' ]; then echo 'A skill folder named chemistry-skills already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills' "$d" && git -C "$d" checkout --quiet '8684584e7d1127940f018157d2c579974fae8f79' -- 'skills/43-wentorai-research-plugins/skills/domains/chemistry' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/43-wentorai-research-plugins/skills/domains/chemistry' ~/.agents/skills/'chemistry-skills' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'chemistry-skills' ~/.claude/skills/'chemistry-skills' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for brycewang-stanford/Auto-Empirical-Research-Skills shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/brycewang-stanford/Auto-Empirical-Research-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-10 | 8684584 | 75 |
| 2026-11-08 | bfa0a6e | 75 |
| 2026-11-07 | bfa0a6e | 55 |