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biomedical-skills
75 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a research skill usually looks things up on the internet.
By brycewang-stanford/Auto-Empirical-Research-Skills (GitHub) · research · 5,016 stars · scanned at commit 8684584
24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides.
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: alphafold.ebi.ac.uk, mygene.info, myvariant.info, mychem.info
The author does not mention this. Expected for a research skill.
Found in 114 places.
Show 17 more
- skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 125
curl -O "https://alphafold.ebi.ac.uk/files/AF-P04637-F1-model_v6.pdb" - skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 128
curl -O "https://alphafold.ebi.ac.uk/files/AF-P04637-F1-model_v6.cif" - skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 131
curl -O "https://alphafold.ebi.ac.uk/files/AF-P04637-F1-predicted_aligned_error_v6.json" - skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 165
resp = requests.get(url) - skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 174
resp = requests.get(prediction["plddtDocUrl"]) - skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 187
resp = requests.get(url) - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 31
curl "https://mygene.info/v3/query?q=BRCA1&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 45
curl -s "https://mygene.info/v3/query?q=BRCA1&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 77
curl -s "https://mygene.info/v3/gene/1017" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 80
curl -s "https://mygene.info/v3/gene/1017?fields=symbol,name,summary,genomic_pos,go" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 111
curl -s "https://myvariant.info/v1/query?q=rs58991260&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 154
curl -s "https://myvariant.info/v1/variant/chr1:g.218631822G>A?fields=dbsnp,cadd,clinvar" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 168
curl -s "https://mychem.info/v1/query?q=aspirin&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 210
curl -s "https://mychem.info/v1/chem/CHEMBL25?fields=drugbank,chembl,pubchem" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 246
resp = requests.get(f"{MYGENE}/query", - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 253
resp = requests.get(f"{MYVARIANT}/query", - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 261
resp = requests.get(f"{MYCHEM}/query",
and 94 more places
Runs commands on your computer
The author does not mention this.
Found in 56 places.
Show 17 more
- skills/43-wentorai-research-plugins/skills/domains/biomedical/alphafold-api/SKILL.md, line 125
curl -O "https://alphafold.ebi.ac.uk/files/AF-P04637-F1-model_v6.pdb" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 31
curl "https://mygene.info/v3/query?q=BRCA1&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 45
curl -s "https://mygene.info/v3/query?q=BRCA1&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 77
curl -s "https://mygene.info/v3/gene/1017" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 111
curl -s "https://myvariant.info/v1/query?q=rs58991260&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 154
curl -s "https://myvariant.info/v1/variant/chr1:g.218631822G>A?fields=dbsnp,cadd,clinvar" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 168
curl -s "https://mychem.info/v1/query?q=aspirin&size=1" - skills/43-wentorai-research-plugins/skills/domains/biomedical/biothings-api/SKILL.md, line 210
curl -s "https://mychem.info/v1/chem/CHEMBL25?fields=drugbank,chembl,pubchem" - skills/43-wentorai-research-plugins/skills/domains/biomedical/clawbio-guide/SKILL.md, line 23
openclaw plugins install @clawbio/clawbio - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api-v2/SKILL.md, line 50
curl "https://clinicaltrials.gov/api/v2/studies?query.cond=diabetes&query.intr=metformin&pageSize=1&fields=NCTId,BriefTitle,OverallStatus" - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api-v2/SKILL.md, line 77
curl "https://clinicaltrials.gov/api/v2/studies/NCT04280705?fields=NCTId,BriefTitle,OverallStatus,Phase,LeadSponsorName,EnrollmentCount,Condition,InterventionNa - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api-v2/SKILL.md, line 109
curl "https://clinicaltrials.gov/api/v2/stats/size" - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api-v2/SKILL.md, line 128
curl "https://clinicaltrials.gov/api/v2/stats/fieldValues/Phase" - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api/SKILL.md, line 54
curl "https://clinicaltrials.gov/api/v2/studies?query.cond=cancer&query.intr=immunotherapy&filter.overallStatus=RECRUITING&pageSize=5" - skills/43-wentorai-research-plugins/skills/domains/biomedical/clinicaltrials-api/SKILL.md, line 76
curl "https://clinicaltrials.gov/api/v2/studies/NCT04280705" - skills/43-wentorai-research-plugins/skills/domains/biomedical/ena-sequence-api/SKILL.md, line 25
curl "https://www.ebi.ac.uk/ena/portal/api/search?query=CRISPR+cas9&result=study&limit=20&format=json" - skills/43-wentorai-research-plugins/skills/domains/biomedical/ena-sequence-api/SKILL.md, line 38
curl "https://www.ebi.ac.uk/ena/browser/api/xml/PRJEB12345"
and 36 more places
Downloads and installs other software
The author does not mention this.
Found in 2 places.
Safer alternatives
Low-risk skills in the same category (research) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'biomedical-skills' ] || [ -L ~/.agents/skills/'biomedical-skills' ]; then echo 'A skill folder named biomedical-skills already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills' "$d" && git -C "$d" checkout --quiet '8684584e7d1127940f018157d2c579974fae8f79' -- 'skills/43-wentorai-research-plugins/skills/domains/biomedical' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/43-wentorai-research-plugins/skills/domains/biomedical' ~/.agents/skills/'biomedical-skills' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'biomedical-skills' ~/.claude/skills/'biomedical-skills' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for brycewang-stanford/Auto-Empirical-Research-Skills shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/brycewang-stanford/Auto-Empirical-Research-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-10 | 8684584 | 75 |
| 2026-11-08 | bfa0a6e | 75 |
| 2026-11-07 | bfa0a6e | 75 |