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scvi-tools

80 / 100 · Low risk

Fine to try.

By boisenoise/skills-collections (GitHub) · other · 12 stars · scanned at commit 419c39f

Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scvi-tools' ] || [ -L ~/.agents/skills/'scvi-tools' ]; then echo 'A skill folder named scvi-tools already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/boisenoise/skills-collections' "$d" && git -C "$d" checkout --quiet '419c39fde874b8baecbb36a397b967e0190a2ece' -- 'skills/kdense-scvi-tools' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/kdense-scvi-tools' ~/.agents/skills/'scvi-tools' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scvi-tools' ~/.claude/skills/'scvi-tools' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• LeoYeAI/agent-master-skills/skills/scvi-tools
• stanfish06/skillquarium/skills/scvi-tools