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qiime2-amplicon

95 / 100 · Low risk

Fine to try.

By boisenoise/skills-collections (GitHub) · other · 12 stars · scanned at commit 419c39f

Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic classifiers.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'qiime2-amplicon' ] || [ -L ~/.agents/skills/'qiime2-amplicon' ]; then echo 'A skill folder named qiime2-amplicon already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/boisenoise/skills-collections' "$d" && git -C "$d" checkout --quiet '419c39fde874b8baecbb36a397b967e0190a2ece' -- 'skills/kdense-qiime2-amplicon' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/kdense-qiime2-amplicon' ~/.agents/skills/'qiime2-amplicon' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'qiime2-amplicon' ~/.claude/skills/'qiime2-amplicon' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• LeoYeAI/agent-master-skills/skills/qiime2-amplicon