← All skills

deepspot-m

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By boisenoise/skills-collections (GitHub) · coding · 12 stars · scanned at commit 419c39f

Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'deepspot-m' ] || [ -L ~/.agents/skills/'deepspot-m' ]; then echo 'A skill folder named deepspot-m already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/boisenoise/skills-collections' "$d" && git -C "$d" checkout --quiet '419c39fde874b8baecbb36a397b967e0190a2ece' -- 'skills/kdense-deepspot-m' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/kdense-deepspot-m' ~/.agents/skills/'deepspot-m' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'deepspot-m' ~/.claude/skills/'deepspot-m' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for boisenoise/skills-collections shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/boisenoise/skills-collections.svg)](https://zalavijaysinh.github.io/skilltrust/repos/boisenoise/skills-collections/)

Score history

Also found in

Identical copies of this skill exist at:

• LeoYeAI/agent-master-skills/skills/deepspot-m