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cellprofiler

95 / 100 · Low risk

Fine to try.

By boisenoise/skills-collections (GitHub) · media · 12 stars · scanned at commit 419c39f

Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'cellprofiler' ] || [ -L ~/.agents/skills/'cellprofiler' ]; then echo 'A skill folder named cellprofiler already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/boisenoise/skills-collections' "$d" && git -C "$d" checkout --quiet '419c39fde874b8baecbb36a397b967e0190a2ece' -- 'skills/kdense-cellprofiler' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/kdense-cellprofiler' ~/.agents/skills/'cellprofiler' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'cellprofiler' ~/.claude/skills/'cellprofiler' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• LeoYeAI/agent-master-skills/skills/cellprofiler