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mouse-phenome-database
77 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.
By BioTender-max/awesome-bio-agent-skills (GitHub) · data · 219 stars · scanned at commit 8cbdd18
Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. Browse 520+ projects, look up per-project measure metadata, pull strain-level means (raw or LS-mean adjusted) and per-animal values, find measures by MP/VT ontology terms, and resolve strain nomenclature or gene coordinates. Use for QTL support, cross-strain comparison, mouse model selection, and ontology-driven phenotype discovery. Use monarch-database for disease-gene-phenotype knowledge g…
Works with any agent that supports SKILL.md skills.
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Runs commands on your computer
The author does not mention this.
Found in 1 place.
Connects to the internet
This is disclosed by the author in the skill's SKILL.md or README. Expected for a data skill.
Found in 28 places.
Show 17 more
- skills/sciagent/mouse-phenome-database/SKILL.md, line 74
filters = requests.get(f"{MPD}/project_filters/panelsym", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 78
r = requests.get(f"{MPD}/projects", params={"panelsym": "BXD"}, timeout=30) - skills/sciagent/mouse-phenome-database/SKILL.md, line 94
r = requests.get(f"{MPD}/projects", params={"mpdsector": "qtla"}, timeout=30) - skills/sciagent/mouse-phenome-database/SKILL.md, line 111
r = requests.get(f"{MPD}/projects/Jaxwest1/dataset", timeout=60) - skills/sciagent/mouse-phenome-database/SKILL.md, line 120
strains = requests.get(f"{MPD}/projects/Jaxwest1/strains", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 125
pubs = requests.get(f"{MPD}/projects/Jaxwest1/publications", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 139
r = requests.get(f"{MPD}/pheno/measureinfo/Jaxwest1", timeout=30) - skills/sciagent/mouse-phenome-database/SKILL.md, line 155
r = requests.get(f"{MPD}/pheno/measureinfo/15101", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 174
r = requests.get(f"{MPD}/pheno/strainmeans/15101", timeout=30) - skills/sciagent/mouse-phenome-database/SKILL.md, line 186
r = requests.get(f"{MPD}/pheno/lsmeans/Jaxwest1", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 200
r = requests.get(f"{MPD}/pheno/animalvals/15101", timeout=30) - skills/sciagent/mouse-phenome-database/SKILL.md, line 222
r = requests.get(f"{MPD}/pheno/measures_by_ontology/MP:0001262", - skills/sciagent/mouse-phenome-database/SKILL.md, line 243
r = requests.get(f"{MPD}/straininfo", params={"name": "C57BL/6J"}, timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 260
r = requests.get(f"{MPD}/geneinfo/Lep", timeout=30).json() - skills/sciagent/mouse-phenome-database/SKILL.md, line 324
projects = requests.get(f"{MPD}/projects", timeout=30).json()["projects"] - skills/sciagent/mouse-phenome-database/SKILL.md, line 334
mi = requests.get(f"{MPD}/pheno/measureinfo/{projsym}", timeout=30).json()["measures_info"] - skills/sciagent/mouse-phenome-database/SKILL.md, line 339
sm = pd.DataFrame(requests.get(f"{MPD}/pheno/strainmeans/{hr['measnum']}", timeout=30).json()["strainmeans"])
and 8 more places
Safer alternatives
Low-risk skills in the same category (data) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'mouse-phenome-database' ] || [ -L ~/.agents/skills/'mouse-phenome-database' ]; then echo 'A skill folder named mouse-phenome-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/sciagent/mouse-phenome-database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/sciagent/mouse-phenome-database' ~/.agents/skills/'mouse-phenome-database' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'mouse-phenome-database' ~/.claude/skills/'mouse-phenome-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for BioTender-max/awesome-bio-agent-skills shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/BioTender-max/awesome-bio-agent-skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-07 | 8cbdd18 | 77 |