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jgi-lakehouse

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By BioTender-max/awesome-bio-agent-skills (GitHub) · design · 219 stars · scanned at commit 8cbdd18

Queries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. Downloads genome files from JGI filesystem using IMG taxon OIDs and links JGI taxon OIDs to read files through PMO/GOLD identifiers and JAMO. Use when working with JGI data, GOLD projects, IMG annotations, or downloading genomes.

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

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• 100 Low riskdata-lakehouse-designlionelsimai/claude-skills-collection · 38 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'jgi-lakehouse' ] || [ -L ~/.agents/skills/'jgi-lakehouse' ]; then echo 'A skill folder named jgi-lakehouse already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/omics/jgi-lakehouse' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/omics/jgi-lakehouse' ~/.agents/skills/'jgi-lakehouse' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'jgi-lakehouse' ~/.claude/skills/'jgi-lakehouse' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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