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freesurfer-tool

97 / 100 · Low risk

Fine to try.

By BioTender-max/awesome-bio-agent-skills (GitHub) · design · 219 stars · scanned at commit 8cbdd18

Use this skill whenever the user wants to process structural MRI data (T1w, T2w, FLAIR, etc.) with FreeSurfer, especially for cortical/subcortical segmentation, surface reconstruction, parcellation, cortical thickness, volume statistics, or full recon-all pipeline. Triggers include: 'freesurfer', 'recon-all', 'segment MRI', 'FreeSurfer processing', 'cortical segmentation', 'subcortical segmentation', 'run recon-all', 'freesurfer T1', 'process brain MRI with freesurfer', 'aseg aparc', or any req…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'freesurfer-tool' ] || [ -L ~/.agents/skills/'freesurfer-tool' ]; then echo 'A skill folder named freesurfer-tool already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/neuroclaw/freesurfer-tool' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/neuroclaw/freesurfer-tool' ~/.agents/skills/'freesurfer-tool' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'freesurfer-tool' ~/.claude/skills/'freesurfer-tool' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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