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bio-epidemiological-genomics-variant-surveillance

75 / 100 · Review before installing

Check before installing.

By BioTender-max/awesome-bio-agent-skills (GitHub) · design · 219 stars · scanned at commit 8cbdd18

Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

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Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-epidemiological-genomics-variant-surveillance' ] || [ -L ~/.agents/skills/'bio-epidemiological-genomics-variant-surveillance' ]; then echo 'A skill folder named bio-epidemiological-genomics-variant-surveillance already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/bioskills/variant-surveillance' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bioskills/variant-surveillance' ~/.agents/skills/'bio-epidemiological-genomics-variant-surveillance' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-epidemiological-genomics-variant-surveillance' ~/.claude/skills/'bio-epidemiological-genomics-variant-surveillance' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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