bio-uniprot-access

82 / 100 · Low risk

Fine to try.

By BioTender-max/awesome-bio-agent-skills (GitHub) · design · 219 stars · scanned at commit 8cbdd18

Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes. Use when fetching UniProtKB entries, navigating the JSON schema, choosing between UniProtKB/UniRef/UniParc/Proteomes resources, deciding stream vs search endpoint for batch retrieval, running ID-mapping jobs with the async pattern, handling isoform suffixes, or filtering reviewed Swiss-Prot vs auto-annotated TrEMBL. Encodes the legacy URL …

Works with any agent that supports SKILL.md skills.

Partially scanned — some files couldn't be read; we'll retry on the next scan

What this skill can do

Sends data to these websites: rest.uniprot.org

This is disclosed by the author in the skill's SKILL.md or README.

Found in 12 places.

skills/bioskills/uniprot-access/SKILL.md, line 31- Python: `requests.get('https://rest.uniprot.org/uniprotkb/...')` (REST API)
skills/bioskills/uniprot-access/SKILL.md, line 33- CLI: `curl https://rest.uniprot.org/uniprotkb/P04637.json`
skills/bioskills/uniprot-access/SKILL.md, line 133entry = requests.get('https://rest.uniprot.org/uniprotkb/P04637.json').json()

Show 9 more

skills/bioskills/uniprot-access/SKILL.md, line 165iso = requests.get('https://rest.uniprot.org/uniprotkb/P04637-2.fasta').text
skills/bioskills/uniprot-access/SKILL.md, line 206r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession}.json')
skills/bioskills/uniprot-access/SKILL.md, line 240r = requests.get(url, params=params)
skills/bioskills/uniprot-access/SKILL.md, line 264r = requests.get(url, params=params, stream=True)
skills/bioskills/uniprot-access/SKILL.md, line 289submit = requests.post('https://rest.uniprot.org/idmapping/run',
skills/bioskills/uniprot-access/SKILL.md, line 297status = requests.get(f'https://rest.uniprot.org/idmapping/status/{job_id}')
skills/bioskills/uniprot-access/SKILL.md, line 309results = requests.get(f'https://rest.uniprot.org/idmapping/results/{job_id}')
skills/bioskills/uniprot-access/SKILL.md, line 338r = requests.get(url, stream=True)
skills/bioskills/uniprot-access/SKILL.md, line 354r = requests.get(f'https://rest.uniprot.org/uniref/{uniref_id}.json')

Downloads and installs other software

The author does not mention this.

Found in 1 place.

skills/bioskills/uniprot-access/usage-guide.md, line 10pip install requests pandas

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-uniprot-access' ] || [ -L ~/.agents/skills/'bio-uniprot-access' ]; then echo 'A skill folder named bio-uniprot-access already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/bioskills/uniprot-access' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bioskills/uniprot-access' ~/.agents/skills/'bio-uniprot-access' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-uniprot-access' ~/.claude/skills/'bio-uniprot-access' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Date	Version	Score
2026-11-07	`8cbdd18`	80