bio-genome-assembly-short-read-assembly
95 / 100 · Low risk
Fine to try.
De novo genome assembly from Illumina short reads using SPAdes. Covers bacterial, fungal, and small eukaryotic genome assembly, as well as metagenome and transcriptome assembly modes. Use when assembling genomes from Illumina reads.
Partially scanned — some files couldn't be read; we'll retry on the next scan
What this skill can do
Runs commands on your computer
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'bio-genome-assembly-short-read-assembly' ] || [ -L ~/.agents/skills/'bio-genome-assembly-short-read-assembly' ]; then echo 'A skill folder named bio-genome-assembly-short-read-assembly already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/BioTender-max/awesome-bio-agent-skills' "$d" && git -C "$d" checkout --quiet '8cbdd18837aa6296c4e77616a03b323bd69b57b1' -- 'skills/bioskills/short-read-assembly' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bioskills/short-read-assembly' ~/.agents/skills/'bio-genome-assembly-short-read-assembly' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-genome-assembly-short-read-assembly' ~/.claude/skills/'bio-genome-assembly-short-read-assembly' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
[](https://zalavijaysinh.github.io/skilltrust/repos/BioTender-max/awesome-bio-agent-skills/)
Score history
| Date | Version | Score |
|---|---|---|
| 2026-11-07 | 8cbdd18 | 100 |