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pydeseq2
80 / 100 · Low risk
Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.
By anubhavg-icpl/vibe (GitHub) · coding · 13 stars · scanned at commit d51e7ac
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis. Use when you need help with pydeseq2.
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this. It runs automatically when the plugin is installed. Expected for a coding skill.
Found in 64 places.
Show 17 more
- .claude/settings.json, line 19
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" pre-edit'", - .claude/settings.json, line 31
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" post-edit'", - .claude/settings.json, line 41
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" post-bash'", - .claude/settings.json, line 52
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" route'", - .claude/settings.json, line 63
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" session-restore'", - .claude/settings.json, line 68
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/auto-memory-hook.mjs\" import'", - .claude/settings.json, line 79
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" session-end'", - .claude/settings.json, line 90
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/auto-memory-hook.mjs\" sync'", - .claude/settings.json, line 102
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" compact-manual'" - .claude/settings.json, line 106
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" session-end'", - .claude/settings.json, line 116
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" compact-auto'" - .claude/settings.json, line 120
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" session-end'", - .claude/settings.json, line 131
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" status'", - .claude/settings.json, line 142
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" post-task'", - .claude/settings.json, line 153
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/hook-handler.cjs\" notify'", - .claude/settings.json, line 162
"command": "sh -c 'exec node \"${CLAUDE_PROJECT_DIR:-.}/.claude/helpers/statusline.cjs\"'" - .mcp.json, line 4
"command": "npx",
and 44 more places
Downloads and installs other software
The author does not mention this. It runs automatically when the plugin is installed.
Found in 12 places.
Show 9 more
- .claude/settings.json, line 167
"Bash(npx claude-flow*)", - .mcp.json, line 4
"command": "npx", - hooks/cmods/README.md, line 96
npx eslint --fix "$FILE" 2>/dev/null - hooks/cmods/post-edit-format.sh, line 29
npx prettier --write "$FILE" 2>/dev/null && FORMATTED=true - hooks/cmods/post-edit-format.sh, line 32
npx biome format --write "$FILE" 2>/dev/null && FORMATTED=true - hooks/cmods/post-edit-format.sh, line 80
npx prettier --write "$FILE" 2>/dev/null && FORMATTED=true - hooks/cmods/post-edit-format.sh, line 86
npx prettier --write "$FILE" 2>/dev/null && FORMATTED=true - hooks/cmods/pre-commit-lint.sh, line 38
echo "$files" | xargs npx eslint --max-warnings 0 2>/dev/null - hooks/hooks.json, line 106
"command": "#!/bin/bash\n# Run TypeScript check after editing TS files\ninput=$(cat)\nfile_path=$(echo \"$input\" | jq -r '.tool_input.file_path // \"\"')\n\nif
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'pydeseq2' ] || [ -L ~/.agents/skills/'pydeseq2' ]; then echo 'A skill folder named pydeseq2 already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/anubhavg-icpl/vibe' "$d" && git -C "$d" checkout --quiet 'd51e7ac9a34111cd2e63daed83c2198f91570050' -- 'skills/sci-pydeseq2' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/sci-pydeseq2' ~/.agents/skills/'pydeseq2' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'pydeseq2' ~/.claude/skills/'pydeseq2' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for anubhavg-icpl/vibe shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/anubhavg-icpl/vibe/)
Score history
| Date | Version | Score |
|---|
| 2026-11-08 | d51e7ac | 80 |