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single-cell-rna-qc

95 / 100 · Low risk

Fine to try.

By aicodedecode/awesome-muse-skills (GitHub) · design · 59 stars · scanned at commit faf37c0

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

Works with any agent that supports SKILL.md skills.

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What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'single-cell-rna-qc' ] || [ -L ~/.agents/skills/'single-cell-rna-qc' ]; then echo 'A skill folder named single-cell-rna-qc already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/aicodedecode/awesome-muse-skills' "$d" && git -C "$d" checkout --quiet 'faf37c0859ebf627bfcb5225e8057d088691e0ae' -- 'skills-imported/single-cell-rna-qc' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills-imported/single-cell-rna-qc' ~/.agents/skills/'single-cell-rna-qc' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'single-cell-rna-qc' ~/.claude/skills/'single-cell-rna-qc' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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