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bio-research-scvi-tools

80 / 100 · Low risk

Fine to try.

By aicodedecode/awesome-muse-skills (GitHub) · design · 59 stars · scanned at commit faf37c0

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers incl…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-research-scvi-tools' ] || [ -L ~/.agents/skills/'bio-research-scvi-tools' ]; then echo 'A skill folder named bio-research-scvi-tools already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/aicodedecode/awesome-muse-skills' "$d" && git -C "$d" checkout --quiet 'faf37c0859ebf627bfcb5225e8057d088691e0ae' -- 'skills-imported/bio-research-scvi-tools' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills-imported/bio-research-scvi-tools' ~/.agents/skills/'bio-research-scvi-tools' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-research-scvi-tools' ~/.claude/skills/'bio-research-scvi-tools' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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