← All skills

sciagent-scvi-tools-single-cell

85 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · coding · 118 stars · scanned at commit 6f98a63

Deep generative models for single-cell omics: probabilistic batch correction (scVI), semi-supervised annotation (scANVI), CITE-seq RNA+protein (totalVI), transfer learning (scARCHES), and DE with uncertainty. Unified setup→train→extract API on AnnData. Use harmony-batch-correction for fast linear correction without deep learning; muon for multi-modal MuData workflows.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sciagent-scvi-tools-single-cell' ] || [ -L ~/.agents/skills/'sciagent-scvi-tools-single-cell' ]; then echo 'A skill folder named sciagent-scvi-tools-single-cell already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/sciagent-scvi-tools-single-cell' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/sciagent-scvi-tools-single-cell' ~/.agents/skills/'sciagent-scvi-tools-single-cell' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sciagent-scvi-tools-single-cell' ~/.claude/skills/'sciagent-scvi-tools-single-cell' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for ai4nucleome/BioMaster shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/ai4nucleome/BioMaster.svg)](https://zalavijaysinh.github.io/skilltrust/repos/ai4nucleome/BioMaster/)

Score history