sciagent-gget-genomic-databases

85 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · coding · 118 stars · scanned at commit 6f98a63

Unified CLI/Python interface to 20+ genomic databases. Gene lookups (Ensembl search/info/seq), BLAST/BLAT, AlphaFold, Enrichr enrichment, OpenTargets disease/drug, CELLxGENE single-cell, cBioPortal/COSMIC cancer, ARCHS4 expression. Spans genomics, proteomics, disease. For batch/advanced BLAST use biopython; for multi-DB Python SDK use bioservices.

Works with any agent that supports SKILL.md skills.

What this skill can do

Downloads and installs other software

The author does not mention this.

Found in 6 places.

.opencode/bioskills/sciagent-gget-genomic-databases/macro.md, line 30pip install gget
.opencode/bioskills/sciagent-gget-genomic-databases/macro.md, line 4303. **Keep gget updated**: Databases change their structure biweekly. Run `pip install --upgrade gget` regularly to avoid breakage from schema changes.
.opencode/bioskills/sciagent-gget-genomic-databases/macro.md, line 514| `ModuleNotFoundError: gget` | Package not installed | `pip install gget` in clean virtual environment |

Show 3 more

.opencode/bioskills/sciagent-gget-genomic-databases/macro.md, line 519| Database structure changed | gget databases update biweekly | `pip install --upgrade gget` |
.opencode/bioskills/sciagent-gget-genomic-databases/micro.md, line 270| gget itself | Package version | `pip install gget==0.28.6` | Pin in requirements.txt |
.opencode/bioskills/sciagent-gget-genomic-databases/micro.md, line 2891. **Ensembl schema changes**: Gene IDs are stable across releases but annotations change. If `gget.info()` returns unexpected columns, update gget: `pip instal

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sciagent-gget-genomic-databases' ] || [ -L ~/.agents/skills/'sciagent-gget-genomic-databases' ]; then echo 'A skill folder named sciagent-gget-genomic-databases already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/sciagent-gget-genomic-databases' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/sciagent-gget-genomic-databases' ~/.agents/skills/'sciagent-gget-genomic-databases' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sciagent-gget-genomic-databases' ~/.claude/skills/'sciagent-gget-genomic-databases' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Date	Version	Score
2026-11-08	`6f98a63`	100