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sciagent-celltypist-cell-annotation

85 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · other · 118 stars · scanned at commit 6f98a63

Automated scRNA-seq cell type annotation via pre-trained logistic regression. 45+ models: immune, gut, lung, brain, fetal, cancer microenvironments. Input normalized AnnData; outputs per-cell labels, majority-vote cluster labels, confidence scores. Use for fast, reference-backed annotation without manual marker inspection.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sciagent-celltypist-cell-annotation' ] || [ -L ~/.agents/skills/'sciagent-celltypist-cell-annotation' ]; then echo 'A skill folder named sciagent-celltypist-cell-annotation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/sciagent-celltypist-cell-annotation' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/sciagent-celltypist-cell-annotation' ~/.agents/skills/'sciagent-celltypist-cell-annotation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sciagent-celltypist-cell-annotation' ~/.claude/skills/'sciagent-celltypist-cell-annotation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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