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sciagent-cellchat-cell-communication

100 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · coding · 118 stars · scanned at commit 6f98a63

Infer and visualize intercellular communication from scRNA-seq with CellChat (R). Build CellChat from Seurat/counts → subset CellChatDB ligand-receptor pairs → over-expressed genes per group → communication probabilities → pathway signaling → network centrality (senders/receivers/influencers) → chord/heatmap/bubble plots → cross-condition compare. Human, mouse. Use liana for pure-Python.

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sciagent-cellchat-cell-communication' ] || [ -L ~/.agents/skills/'sciagent-cellchat-cell-communication' ]; then echo 'A skill folder named sciagent-cellchat-cell-communication already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/sciagent-cellchat-cell-communication' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/sciagent-cellchat-cell-communication' ~/.agents/skills/'sciagent-cellchat-cell-communication' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sciagent-cellchat-cell-communication' ~/.claude/skills/'sciagent-cellchat-cell-communication' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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