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sciagent-arboreto-grn-inference

85 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · other · 118 stars · scanned at commit 6f98a63

GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix, filter by TFs, infer TF-target-importance links, save network. Dask-parallelized to single-cell scale. Core SCENIC component.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sciagent-arboreto-grn-inference' ] || [ -L ~/.agents/skills/'sciagent-arboreto-grn-inference' ]; then echo 'A skill folder named sciagent-arboreto-grn-inference already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/sciagent-arboreto-grn-inference' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/sciagent-arboreto-grn-inference' ~/.agents/skills/'sciagent-arboreto-grn-inference' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sciagent-arboreto-grn-inference' ~/.claude/skills/'sciagent-arboreto-grn-inference' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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