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omicsclaw-scrnaseq-scanpy-core-analysis
85 / 100 · Low risk
Fine to try.
By ai4nucleome/BioMaster (GitHub) · data · 118 stars · scanned at commit 6f98a63
Complete single-cell RNA-seq analysis using Scanpy from raw data to cell type annotation with clustering and visualization.
Works with any agent that supports SKILL.md skills.
What this skill can do
Downloads and installs other software
The author does not mention this.
Found in 14 places.
Show 11 more
- .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 22
| pandas | ≥1.3 | BSD-3-Clause | Permitted | `pip install pandas` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 23
| matplotlib | ≥3.4 | PSF | Permitted | `pip install matplotlib` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 24
| seaborn | ≥0.12 | BSD-3-Clause | Permitted | `pip install seaborn` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 25
| adjustText | ≥0.8 | MIT | Permitted | `pip install adjustText` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 26
| scrublet | ≥0.2.3 | MIT | Permitted | `pip install scrublet` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 27
| scvi-tools | ≥1.0 | BSD-3-Clause | Permitted | `pip install scvi-tools` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 28
| harmonypy | ≥0.0.9 | GPL-3 | Permitted | `pip install harmonypy` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 29
| celltypist | ≥1.0 | MIT | Permitted | `pip install celltypist` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 30
| pydeseq2 | ≥0.4 | MIT | Permitted | `pip install pydeseq2` | - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 32
**Install all:** `pip install scanpy anndata numpy pandas matplotlib seaborn adjustText scrublet` - .opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis/macro.md, line 238
| `ImportError: No module named 'scanpy'` | Not installed | `pip install scanpy anndata numpy pandas matplotlib seaborn` |
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'omicsclaw-scrnaseq-scanpy-core-analysis' ] || [ -L ~/.agents/skills/'omicsclaw-scrnaseq-scanpy-core-analysis' ]; then echo 'A skill folder named omicsclaw-scrnaseq-scanpy-core-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/omicsclaw-scrnaseq-scanpy-core-analysis' ~/.agents/skills/'omicsclaw-scrnaseq-scanpy-core-analysis' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'omicsclaw-scrnaseq-scanpy-core-analysis' ~/.claude/skills/'omicsclaw-scrnaseq-scanpy-core-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for ai4nucleome/BioMaster shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/ai4nucleome/BioMaster/)
Score history
| Date | Version | Score |
|---|
| 2026-11-08 | 6f98a63 | 85 |