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bioskills-atlas-mapping

100 / 100 · Low risk

Fine to try.

By ai4nucleome/BioMaster (GitHub) · data · 118 stars · scanned at commit 6f98a63

Map query scRNA-seq data onto a pre-trained reference atlas via scArches surgical transfer learning (scVI/scANVI) to obtain a shared latent embedding and transferred cell type labels without retraining the reference.

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bioskills-atlas-mapping' ] || [ -L ~/.agents/skills/'bioskills-atlas-mapping' ]; then echo 'A skill folder named bioskills-atlas-mapping already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ai4nucleome/BioMaster' "$d" && git -C "$d" checkout --quiet '6f98a63aa1823304403475b1929424ccf9d4ec46' -- '.opencode/bioskills/bioskills-atlas-mapping' && mkdir -p ~/.agents/skills && cp -R "$d"/'.opencode/bioskills/bioskills-atlas-mapping' ~/.agents/skills/'bioskills-atlas-mapping' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bioskills-atlas-mapping' ~/.claude/skills/'bioskills-atlas-mapping' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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