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deeptools
80 / 100 · Low risk
Fine to try.
By ahang1598/doubao-workbuddy-qwenwork-skills (GitHub) · data · 97 stars · scanned at commit 5e45653
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 15 places.
Show 12 more
- workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 145
bamCoverage --bam input.bam --outFileName output.bw \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 152
bamCompare -b1 treatment.bam -b2 control.bam -o ratio.bw \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 164
plotFingerprint -b input.bam chip.bam -o fingerprint.png \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 170
multiBamSummary bins --bamfiles *.bam -o counts.npz - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 184
computeMatrix reference-point -S signal.bw -R genes.bed \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 194
plotProfile -m matrix.gz -o profile.png \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 305
samtools index input.bam - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 311
bamCoverage --bam input.bam -o chr1.bw --region chr1 - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 324
python scripts/validate_files.py --bam *.bam --bed regions.bed - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 389
python scripts/validate_files.py --bam sample1.bam sample2.bam \ - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 408
python scripts/workflow_generator.py --list - workbuddy/official_experts/external_plugins/scientific-skills/deeptools/SKILL.md, line 481
grep -A 20 "^### toolname" references/tools_reference.md
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'deeptools' ] || [ -L ~/.agents/skills/'deeptools' ]; then echo 'A skill folder named deeptools already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/ahang1598/doubao-workbuddy-qwenwork-skills' "$d" && git -C "$d" checkout --quiet '5e45653f59a2e4a2a65f575e8aaf7637165674d5' -- 'workbuddy/official_experts/external_plugins/scientific-skills/deeptools' && mkdir -p ~/.agents/skills && cp -R "$d"/'workbuddy/official_experts/external_plugins/scientific-skills/deeptools' ~/.agents/skills/'deeptools' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'deeptools' ~/.claude/skills/'deeptools' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for ahang1598/doubao-workbuddy-qwenwork-skills shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/ahang1598/doubao-workbuddy-qwenwork-skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-07 | 5e45653 | 80 |
Also found in
Identical copies of this skill exist at:
- infometa/workbuddyskills/plugins/codebuddy-plugins-official/external_plugins/scientific-skills/deeptools